It sounds like the CD transport mechanism is not sitting correctly - when the cover is open, the pressure is removed, so it's quiet, and when the cover is open, it's pressuring a part of the mechanism, so it resonates.
Replace all the capacitors on that PCB - send me a pic of the pcb if you want a kit with the correct replacements.
Adjust the laser current to NOT 50mV as shown in the SM, but 45mV. RW's need a lower current to be read correctly. Do this only after cap replacement.
Learn from the mistakes of others - you'll not live long enough to make them all yourself!