Welcome,
The BeoSystem 3 is not required to get the best from your proposed setup. In fact, one could argue that it would reduce the quality of the sound you can get. That depends upon whether you accept B&O's claim that the sound through Powerlink from the BeoSystem 3 is as good as the sound through coax s/pdif (digital) from your BeoSound 9000 straight into the BeoLab 5s.
The BL5s are unique in that they can accept a coax s/pdif digital signal, and have their own Digital-to-Analog converters. The signal path in the BL5s is such that any signal you feed them will be converted to 24bit/96kHz (either upconverted digital, or analog-to-digital converted), before going to the 32bit/192kHz final DA- stage that converts again (!) before ICEpower amplification. This is actually a good thing -- but also means that if your digital signal has already been converted, say in a BeoSystem 3, to an analog signal for PowerLink, then it will go through an unnecessary new conversion phase in the BeoLab 5s.
Direct: Digital from CD - 16bit/44.1kHz>UP to 24bit/96kHz>Digital-to-Analog 32bit/192kHz>ICEpower
Via BS3: Digital from CD - 16bit/44.1kHz>Digital-to-Analog BeoSystem 3>Analog-to-Digital 24/96kHz, etc.
(Don't know the D-to-A conversion used in BeoSystem 3, but that signal will still be converted to a digital 24/96.)
Which is why I feel pretty confident in stating that you'll be very well served with a BeoSound 9000>BeoLab 5 solution -- when connecting the s/pdif cable to the loudspeakers. You also want to connect the Powerlink cables, but these are then used to control the speakers, volume and balance, etc. The speakers always give priority to the s/pdif signal, if it's detected, which means you'll have B&O control of the speakers, combined with a direct digital signal.